spikeinterface
0.90.0
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Modules tutorials
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Installing Spike Sorters
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spikeinterface
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A
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B
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C
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D
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E
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F
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G
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I
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L
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M
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N
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P
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R
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S
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T
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U
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W
A
aggregate_count_units() (spikeinterface.comparison.GroundTruthStudy method)
aggregate_dataframes() (spikeinterface.comparison.GroundTruthStudy method)
aggregate_performance_by_unit() (spikeinterface.comparison.GroundTruthStudy method)
aggregate_run_times() (spikeinterface.comparison.GroundTruthStudy method)
append_recordings() (in module spikeinterface.core)
append_sortings() (in module spikeinterface.core)
available_sorters() (in module spikeinterface.sorters)
B
bandpass_filter() (in module spikeinterface.toolkit.preprocessing)
BaseEvent (class in spikeinterface.core)
BaseRecording (class in spikeinterface.core)
BaseSorting (class in spikeinterface.core)
BinaryRecordingExtractor (class in spikeinterface.core)
blank_staturation() (in module spikeinterface.toolkit.preprocessing)
C
calculate_template_metrics() (in module spikeinterface.toolkit.postprocessing)
center() (in module spikeinterface.toolkit.preprocessing)
ChannelSliceRecording (class in spikeinterface.core)
ChunkRecordingExecutor (class in spikeinterface.core)
clip() (in module spikeinterface.toolkit.preprocessing)
common_reference() (in module spikeinterface.toolkit.preprocessing)
compare_multiple_sorters() (in module spikeinterface.comparison)
compare_sorter_to_ground_truth() (in module spikeinterface.comparison)
compare_two_sorters() (in module spikeinterface.comparison)
compute_correlograms() (in module spikeinterface.toolkit.postprocessing)
compute_metrics() (spikeinterface.comparison.GroundTruthStudy method)
compute_principal_components() (in module spikeinterface.toolkit.postprocessing)
compute_quality_metrics() (in module spikeinterface.toolkit.qualitymetrics)
compute_unit_centers_of_mass() (in module spikeinterface.toolkit.postprocessing)
concat_all_snr() (spikeinterface.comparison.GroundTruthStudy method)
concatenate_recordings() (in module spikeinterface.core)
copy_sortings() (spikeinterface.comparison.GroundTruthStudy method)
count_bad_units() (spikeinterface.comparison.GroundTruthComparison method)
count_false_positive_units() (spikeinterface.comparison.GroundTruthComparison method)
count_overmerged_units() (spikeinterface.comparison.GroundTruthComparison method)
count_redundant_units() (spikeinterface.comparison.GroundTruthComparison method)
count_well_detected_units() (spikeinterface.comparison.GroundTruthComparison method)
create() (spikeinterface.comparison.GroundTruthStudy class method)
D
detect_peaks() (in module spikeinterface.sortingcomponents)
download_dataset() (in module spikeinterface.core)
E
export_report() (in module spikeinterface.exporters)
export_to_phy() (in module spikeinterface.exporters)
extract_waveforms() (in module spikeinterface.core)
F
filter() (in module spikeinterface.toolkit.preprocessing)
FrameSliceRecording (class in spikeinterface.core)
G
get_agreement_fraction() (spikeinterface.comparison.SymmetricSortingComparison method)
get_bad_units() (spikeinterface.comparison.GroundTruthComparison method)
get_best_unit_match1() (spikeinterface.comparison.SymmetricSortingComparison method)
get_best_unit_match2() (spikeinterface.comparison.SymmetricSortingComparison method)
get_channel_distances() (in module spikeinterface.toolkit)
get_closest_channels() (in module spikeinterface.toolkit)
get_confusion_matrix() (spikeinterface.comparison.GroundTruthComparison method)
get_default_params() (in module spikeinterface.sorters)
get_false_positive_units() (spikeinterface.comparison.GroundTruthComparison method)
get_ground_truth() (spikeinterface.comparison.GroundTruthStudy method)
get_matching() (spikeinterface.comparison.SymmetricSortingComparison method)
get_matching_event_count() (spikeinterface.comparison.SymmetricSortingComparison method)
get_matching_unit_list1() (spikeinterface.comparison.SymmetricSortingComparison method)
get_matching_unit_list2() (spikeinterface.comparison.SymmetricSortingComparison method)
get_metrics() (spikeinterface.comparison.GroundTruthStudy method)
get_noise_levels() (in module spikeinterface.toolkit)
get_overmerged_units() (spikeinterface.comparison.GroundTruthComparison method)
get_performance() (spikeinterface.comparison.GroundTruthComparison method)
get_quality_metric_list() (in module spikeinterface.toolkit.qualitymetrics)
get_random_data_chunks() (in module spikeinterface.toolkit)
get_recording() (spikeinterface.comparison.GroundTruthStudy method)
get_redundant_units() (spikeinterface.comparison.GroundTruthComparison method)
get_sorter_description() (in module spikeinterface.sorters)
get_sorting() (spikeinterface.comparison.GroundTruthStudy method)
get_spike_amplitudes() (in module spikeinterface.toolkit.postprocessing)
get_template_amplitudes() (in module spikeinterface.toolkit.postprocessing)
get_template_channel_sparsity() (in module spikeinterface.toolkit.postprocessing)
get_template_extremum_amplitude() (in module spikeinterface.toolkit.postprocessing)
get_template_extremum_channel() (in module spikeinterface.toolkit.postprocessing)
get_template_extremum_channel_peak_shift() (in module spikeinterface.toolkit.postprocessing)
get_template_metric_names() (in module spikeinterface.toolkit.postprocessing)
get_units_snr() (spikeinterface.comparison.GroundTruthStudy method)
get_well_detected_units() (spikeinterface.comparison.GroundTruthComparison method)
GroundTruthComparison (class in spikeinterface.comparison)
GroundTruthStudy (class in spikeinterface.comparison)
I
installed_sorters() (in module spikeinterface.sorters)
L
load_extractor() (in module spikeinterface.core)
localize_peaks() (in module spikeinterface.sortingcomponents)
M
module
spikeinterface.comparison
spikeinterface.core
spikeinterface.exporters
spikeinterface.extractors
spikeinterface.sorters
spikeinterface.sortingcomponents
spikeinterface.toolkit
spikeinterface.toolkit.postprocessing
spikeinterface.toolkit.preprocessing
spikeinterface.toolkit.qualitymetrics
spikeinterface.widgets
N
normalize_by_quantile() (in module spikeinterface.toolkit.preprocessing)
notch_filter() (in module spikeinterface.toolkit.preprocessing)
NpzSortingExtractor (class in spikeinterface.core)
NumpyRecording (class in spikeinterface.core)
NumpySorting (class in spikeinterface.core)
P
plot_agreement_matrix() (in module spikeinterface.widgets)
plot_amplitudes_distribution() (in module spikeinterface.widgets)
plot_amplitudes_timeseries() (in module spikeinterface.widgets)
plot_autocorrelograms() (in module spikeinterface.widgets)
plot_comparison_collision_by_similarity() (in module spikeinterface.widgets)
plot_comparison_collision_pair_by_pair() (in module spikeinterface.widgets)
plot_confusion_matrix() (in module spikeinterface.widgets)
plot_crosscorrelograms() (in module spikeinterface.widgets)
plot_drift_over_time() (in module spikeinterface.widgets)
plot_isi_distribution() (in module spikeinterface.widgets)
plot_multicomp_agreement() (in module spikeinterface.widgets)
plot_multicomp_agreement_by_sorter() (in module spikeinterface.widgets)
plot_multicomp_graph() (in module spikeinterface.widgets)
plot_peak_activity_map() (in module spikeinterface.widgets)
plot_principal_component() (in module spikeinterface.widgets)
plot_probe_map() (in module spikeinterface.widgets)
plot_rasters() (in module spikeinterface.widgets)
plot_sorting_performance() (in module spikeinterface.widgets)
plot_timeseries() (in module spikeinterface.widgets)
plot_unit_localization() (in module spikeinterface.widgets)
plot_unit_probe_map() (in module spikeinterface.widgets)
plot_unit_summary() (in module spikeinterface.widgets)
plot_unit_templates() (in module spikeinterface.widgets)
plot_unit_waveform_density_map() (in module spikeinterface.widgets)
plot_unit_waveforms() (in module spikeinterface.widgets)
plot_units_depth_vs_amplitude() (in module spikeinterface.widgets)
print_performance() (spikeinterface.comparison.GroundTruthComparison method)
print_sorter_versions() (in module spikeinterface.sorters)
print_summary() (spikeinterface.comparison.GroundTruthComparison method)
R
read_alf_sorting() (in module spikeinterface.extractors)
read_bids_folder() (in module spikeinterface.extractors)
read_binary() (in module spikeinterface.core)
read_blackrock() (in module spikeinterface.extractors)
read_ced() (in module spikeinterface.extractors)
read_combinato() (in module spikeinterface.extractors)
read_hdsort() (in module spikeinterface.extractors)
read_herdingspikes() (in module spikeinterface.extractors)
read_intan() (in module spikeinterface.extractors)
read_kilosort() (in module spikeinterface.extractors)
read_klusta() (in module spikeinterface.extractors)
read_maxwell() (in module spikeinterface.extractors)
read_mcsraw() (in module spikeinterface.extractors)
read_mda_recording() (in module spikeinterface.extractors)
read_mda_sorting() (in module spikeinterface.extractors)
read_mearec() (in module spikeinterface.extractors)
read_neuralynx() (in module spikeinterface.extractors)
read_neuroscope() (in module spikeinterface.extractors)
read_nix() (in module spikeinterface.extractors)
read_openephys() (in module spikeinterface.extractors)
read_plexon() (in module spikeinterface.extractors)
read_shybrid_recording() (in module spikeinterface.extractors)
read_shybrid_sorting() (in module spikeinterface.extractors)
read_spike2() (in module spikeinterface.extractors)
read_spikegadgets() (in module spikeinterface.extractors)
read_spikeglx() (in module spikeinterface.extractors)
read_spykingcircus() (in module spikeinterface.extractors)
read_tridesclous() (in module spikeinterface.extractors)
read_waveclust() (in module spikeinterface.extractors)
read_yass() (in module spikeinterface.extractors)
rectify() (in module spikeinterface.toolkit.preprocessing)
remove_artifacts() (in module spikeinterface.toolkit.preprocessing)
remove_bad_channels() (in module spikeinterface.toolkit.preprocessing)
run_comparisons() (spikeinterface.comparison.GroundTruthStudy method)
run_sorter() (in module spikeinterface.sorters)
run_sorters() (in module spikeinterface.sorters)
(spikeinterface.comparison.GroundTruthStudy method)
S
scale() (in module spikeinterface.toolkit.preprocessing)
scan_folder() (spikeinterface.comparison.GroundTruthStudy method)
set_global_dataset_folder() (in module spikeinterface.core)
set_global_tmp_folder() (in module spikeinterface.core)
spikeinterface.comparison
module
spikeinterface.core
module
spikeinterface.exporters
module
spikeinterface.extractors
module
spikeinterface.sorters
module
spikeinterface.sortingcomponents
module
spikeinterface.toolkit
module
spikeinterface.toolkit.postprocessing
module
spikeinterface.toolkit.preprocessing
module
spikeinterface.toolkit.qualitymetrics
module
spikeinterface.widgets
module
SymmetricSortingComparison (class in spikeinterface.comparison)
T
toy_example() (in module spikeinterface.extractors)
U
UnitsSelectionSorting (class in spikeinterface.core)
W
WaveformExtractor (class in spikeinterface.core)
whiten() (in module spikeinterface.toolkit.preprocessing)
write_binary_recording() (in module spikeinterface.core)
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v: 0.90.0
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