Viewers¶
There are several ways to plot signals (raw, preprocessed) and spikes.
Internally, you can use
spikeinterface.widgets
submodule. This creates static figures withmatplotlib
, interactive widgets withipywidgets
, and web-based shareable views withsortingview
.You can view simple
recording
andsorting
objects withephyviewer
You can use the
spikeinterface-gui
You can use the
phy
software
spikeinterface.widgets¶
The easiest way to visualize spikeinterface
objects is to use the widgets
module for plotting.
You can find an extensive description in the module documentation and Widgets module
many examples in this tutorial Widgets tutorials.
spikeinterface-gui¶
spikeinterface-gui is a local desktop application
which is built on top of spikeinterface
.
It is the easiest and fastest way to inspect interactively a spike sorting output. It’s easy to install and ready to use!
Authors: Samuel Garcia
ephyviewer¶
ephyviewer is a customizable viewer that can mix several views together: signals, spikes, events, video.
spikeinterface
objects (recording
and sorting
) can be loaded directly in ephyviewer
with a few lines of code.
See this example.
Author: Jeffrey Gill and Samuel Garcia
phy¶
phy is the de-facto standard tool for manual curation of a sorting output.
The current drawback of phy
is that the dataset (including filtered signals and all waveforms of spikes) has to be copied in a separate folder and this is very time consuming process and occupies a lot of disk space.
Author : Cyrill Rossant