SpikeInterface
0.98.0
Contents:
Overview
Installation
Modules documentation
How to guides
Modules example gallery
Installing Spike Sorters
Viewers
Development
API
Release notes
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SpikeInterface
Index
Edit on GitHub
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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R
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S
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T
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U
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W
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Z
A
add_recording_segment() (spikeinterface.core.BaseRecording method)
align_sorting() (in module spikeinterface.postprocessing)
AppendSegmentRecording (class in spikeinterface.core)
AppendSegmentSorting (class in spikeinterface.core)
apply_sortingview_curation() (in module spikeinterface.curation)
astype() (in module spikeinterface.preprocessing)
average_across_direction() (in module spikeinterface.preprocessing)
B
bandpass_filter() (in module spikeinterface.preprocessing)
BaseEvent (class in spikeinterface.core)
BaseRecording (class in spikeinterface.core)
BaseSnippets (class in spikeinterface.core)
BaseSorting (class in spikeinterface.core)
BaseWaveformExtractorExtension (class in spikeinterface.core)
binary_compatible_with() (spikeinterface.core.BaseRecording method)
BinaryFolderRecording (class in spikeinterface.core)
BinaryRecordingExtractor (class in spikeinterface.core)
blank_staturation() (in module spikeinterface.preprocessing)
C
center() (in module spikeinterface.preprocessing)
ChannelSparsity (class in spikeinterface.core)
ChunkRecordingExecutor (class in spikeinterface.core)
clip() (in module spikeinterface.preprocessing)
common_reference() (in module spikeinterface.preprocessing)
compute_amplitude_cutoffs() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_amplitude_medians() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_correlograms() (in module spikeinterface.postprocessing)
compute_drift_metrics() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_firing_rates() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_isi_histograms() (in module spikeinterface.postprocessing)
compute_isi_violations() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_noise_levels() (in module spikeinterface.postprocessing)
compute_presence_ratios() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_principal_components() (in module spikeinterface.postprocessing)
compute_quality_metrics() (in module spikeinterface.qualitymetrics)
compute_refrac_period_violations() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_sliding_rp_violations() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_snrs() (in module spikeinterface.qualitymetrics.misc_metrics)
compute_sparsity() (in module spikeinterface.core)
compute_spike_amplitudes() (in module spikeinterface.postprocessing)
compute_spike_locations() (in module spikeinterface.postprocessing)
compute_template_metrics() (in module spikeinterface.postprocessing)
compute_template_similarity() (in module spikeinterface.postprocessing)
compute_unit_locations() (in module spikeinterface.postprocessing)
ConcatenateSegmentRecording (class in spikeinterface.core)
correct_lsb() (in module spikeinterface.preprocessing)
correct_motion() (in module spikeinterface.preprocessing)
CurationSorting (class in spikeinterface.curation)
D
delete_extension() (spikeinterface.core.WaveformExtractor method)
delete_waveforms() (spikeinterface.core.WaveformExtractor method)
depth_order() (in module spikeinterface.preprocessing)
detect_bad_channels() (in module spikeinterface.preprocessing)
detect_peaks() (in module spikeinterface.sortingcomponents.peak_detection)
directional_derivative() (in module spikeinterface.preprocessing)
download_dataset() (in module spikeinterface.core)
E
extract_waveforms() (in module spikeinterface.core)
F
filter() (in module spikeinterface.preprocessing)
find_cluster_from_peaks() (in module spikeinterface.sortingcomponents.clustering)
find_redundant_units() (in module spikeinterface.curation)
find_spikes_from_templates() (in module spikeinterface.sortingcomponents.matching)
G
gaussian_bandpass_filter() (in module spikeinterface.preprocessing)
get_all_spike_trains() (spikeinterface.core.BaseSorting method)
get_all_templates() (spikeinterface.core.WaveformExtractor method)
get_available_extension_names() (spikeinterface.core.WaveformExtractor method)
get_binary_description() (spikeinterface.core.BaseRecording method)
get_channel_distances() (in module spikeinterface.core)
get_chunk_with_margin() (in module spikeinterface.core)
get_closest_channels() (in module spikeinterface.core)
get_default_qm_params() (in module spikeinterface.qualitymetrics)
get_duration() (spikeinterface.core.BaseRecording method)
get_event_times() (spikeinterface.core.BaseEvent method)
get_events() (spikeinterface.core.BaseEvent method)
get_extension_class() (spikeinterface.core.WaveformExtractor method)
get_memory_size() (spikeinterface.core.BaseRecording method)
get_noise_levels() (in module spikeinterface.core)
get_num_frames() (spikeinterface.core.BaseRecording method)
get_num_samples() (spikeinterface.core.BaseRecording method)
(spikeinterface.core.BaseSorting method)
get_num_segments() (spikeinterface.core.BaseRecording method)
get_potential_auto_merge() (in module spikeinterface.curation)
get_quality_metric_list() (in module spikeinterface.qualitymetrics)
get_quality_pca_metric_list() (in module spikeinterface.qualitymetrics)
get_random_data_chunks() (in module spikeinterface.core)
get_sampled_indices() (spikeinterface.core.WaveformExtractor method)
get_template() (spikeinterface.core.WaveformExtractor method)
get_template_amplitudes() (in module spikeinterface.core)
get_template_extremum_amplitude() (in module spikeinterface.core)
get_template_extremum_channel() (in module spikeinterface.core)
get_template_extremum_channel_peak_shift() (in module spikeinterface.core)
get_template_metric_names() (in module spikeinterface.postprocessing)
get_template_segment() (spikeinterface.core.WaveformExtractor method)
get_time_info() (spikeinterface.core.BaseRecording method)
get_times() (spikeinterface.core.BaseRecording method)
(spikeinterface.core.BaseSorting method)
get_total_duration() (spikeinterface.core.BaseRecording method)
(spikeinterface.core.BaseSorting method)
get_total_memory_size() (spikeinterface.core.BaseRecording method)
get_total_num_spikes() (spikeinterface.core.BaseSorting method)
get_total_samples() (spikeinterface.core.BaseRecording method)
(spikeinterface.core.BaseSorting method)
get_traces() (spikeinterface.core.BaseRecording method)
get_waveforms() (spikeinterface.core.WaveformExtractor method)
get_waveforms_segment() (spikeinterface.core.WaveformExtractor method)
H
has_scaled_traces() (spikeinterface.core.BaseRecording method)
has_time_vector() (spikeinterface.core.BaseRecording method)
(spikeinterface.core.BaseSorting method)
highpass_filter() (in module spikeinterface.preprocessing)
highpass_spatial_filter() (in module spikeinterface.preprocessing)
I
interpolate_bad_channels() (in module spikeinterface.preprocessing)
InterpolateMotionRecording (class in spikeinterface.sortingcomponents.motion_interpolation)
is_binary_compatible() (spikeinterface.core.BaseRecording method)
is_extension() (spikeinterface.core.WaveformExtractor method)
L
lda_metrics() (in module spikeinterface.qualitymetrics.pca_metrics)
load_extension() (spikeinterface.core.WaveformExtractor method)
load_extractor() (in module spikeinterface.core)
load_waveforms() (in module spikeinterface.core)
localize_peaks() (in module spikeinterface.sortingcomponents.peak_localization)
M
mahalanobis_metrics() (in module spikeinterface.qualitymetrics.pca_metrics)
MergeUnitsSorting (class in spikeinterface.curation)
module
spikeinterface.core
spikeinterface.curation
spikeinterface.postprocessing
spikeinterface.preprocessing
spikeinterface.qualitymetrics
spikeinterface.sortingcomponents.clustering
spikeinterface.sortingcomponents.matching
spikeinterface.sortingcomponents.motion_interpolation
spikeinterface.sortingcomponents.peak_detection
spikeinterface.sortingcomponents.peak_localization
N
nearest_neighbors_isolation() (in module spikeinterface.qualitymetrics.pca_metrics)
nearest_neighbors_metrics() (in module spikeinterface.qualitymetrics.pca_metrics)
nearest_neighbors_noise_overlap() (in module spikeinterface.qualitymetrics.pca_metrics)
normalize_by_quantile() (in module spikeinterface.preprocessing)
notch_filter() (in module spikeinterface.preprocessing)
NpyFolderSnippets (class in spikeinterface.core)
NpzFolderSorting (class in spikeinterface.core)
NumpyRecording (class in spikeinterface.core)
NumpySnippets (class in spikeinterface.core)
NumpySorting (class in spikeinterface.core)
O
order_channels_by_depth() (in module spikeinterface.core)
P
phase_shift() (in module spikeinterface.preprocessing)
precompute_templates() (spikeinterface.core.WaveformExtractor method)
R
rectify() (in module spikeinterface.preprocessing)
register_extension() (spikeinterface.core.WaveformExtractor class method)
register_recording() (spikeinterface.core.BaseSorting method)
remove_artifacts() (in module spikeinterface.preprocessing)
remove_duplicated_spikes() (in module spikeinterface.curation)
remove_empty_units() (spikeinterface.core.BaseSorting method)
remove_excess_spikes() (in module spikeinterface.curation)
remove_redundant_units() (in module spikeinterface.curation)
remove_units() (spikeinterface.core.BaseSorting method)
resample() (in module spikeinterface.preprocessing)
S
save() (spikeinterface.core.WaveformExtractor method)
scale() (in module spikeinterface.preprocessing)
select_units() (spikeinterface.core.BaseSorting method)
(spikeinterface.core.WaveformExtractor method)
SelectSegmentRecording (class in spikeinterface.core)
SelectSegmentSorting (class in spikeinterface.core)
set_global_dataset_folder() (in module spikeinterface.core)
set_global_job_kwargs() (in module spikeinterface.core)
set_global_tmp_folder() (in module spikeinterface.core)
set_params() (spikeinterface.core.WaveformExtractor method)
set_recording() (spikeinterface.core.WaveformExtractor method)
set_times() (spikeinterface.core.BaseRecording method)
silence_periods() (in module spikeinterface.preprocessing)
spikeinterface.core
module
spikeinterface.curation
module
spikeinterface.postprocessing
module
spikeinterface.preprocessing
module
spikeinterface.qualitymetrics
module
spikeinterface.sortingcomponents.clustering
module
spikeinterface.sortingcomponents.matching
module
spikeinterface.sortingcomponents.motion_interpolation
module
spikeinterface.sortingcomponents.peak_detection
module
spikeinterface.sortingcomponents.peak_localization
module
SplitSegmentSorting (class in spikeinterface.core)
SplitUnitSorting (class in spikeinterface.curation)
T
to_spike_vector() (spikeinterface.core.BaseSorting method)
U
unsigned_to_signed() (in module spikeinterface.preprocessing)
W
WaveformExtractor (class in spikeinterface.core)
whiten() (in module spikeinterface.preprocessing)
write_binary_recording() (in module spikeinterface.core)
Z
ZarrRecordingExtractor (class in spikeinterface.core)
zero_channel_pad() (in module spikeinterface.preprocessing)
zscore() (in module spikeinterface.preprocessing)
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v: 0.98.0
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